Jump to the main content block

Genomics Service Platform

  • When the results are published, please indicate in the acknowledgment of the article. “The NGS experiments were performed by the NGS Core Laboratory, Molecular Medicine Research Center, Chang Gung University, Taiwan”. To apply for the services or technical support listed in this core facility, please sign the "Consent Form" and agree to state in the acknowledgment of the article when the results are published. 
  • The works did not belong to "service items listed in the core facilities, can be implemented as cooperation, and related details such as the sharing of results (the ranking of authors) are drawn up by the cooperating researchers according to the general academic cooperation practices.

 

NO.

Item

 
 

A. Nucleic acid extraction

 

5-A1-1

A-1. Cell / Tissue nucleic acid extraction (DNA/RNA)

 

5-A1-2

A-2. Exosomal small RNA extraction

 

5-A1-3

A-3. FFPE DNA extraction

 

5-A1-4

A-4. FFPE RNA extraction

 

B. Quality Check

 

5-B1-1

B-1. nucleic acid QC

 

5-B1-2

B-2. Library QC

 

5-B1-3

B-3. FFPE DNA QC

 

Sequencing Platform

 

C. RNA Sequencingincluded QCLibrary preparationSequencing

 

C-1. polyA RNA Sequencing (2*75 PE)

 

5-C1-1

C-1-1. 25 M reads

 

5-C1-2

C-1-2. 35 M reads

 

5-C1-3

C-1-3. 50 M reads

 

C-2. Ribominus RNA Sequencing (2*75 PE)

 

5-C2-1

C-2-1. 35 M reads

 

5-C2-2

C-2-2. 50 M reads

 

5-C2-3

C-2-3. 70 M reads

 

C-3. Ribominus RNA Sequencing (2*75 PE) For Bacteria RNA

 

5-C3-1

C-3-1. 10 M reads

 

5-C3-2

C-3-2. 20 M reads

 

C-4. RNA Exome Sequencing (2*75 PE) (Not included FFPE RNA extraction)

 

5-C4-1

C-4-1. 25 M reads

 

5-C4-2

C-4-2. 35 M reads

 

5-C4-3

C-4-3. 50 M reads

 

C-5. Small RNA Sequencing (1*75 SE)

 

5-C5-1

C-5-1. 10 M reads

 

5-C5-2

C-5-2. 15 M reads

 

5-C5-3

C-5-3. 20 M reads

 

C-6. Exosomal RNA Sequencing (1*75 SE)(Included exosomal RNA extraction)

 

5-C6-1

C-6-1. 10 M reads

 

5-C6-2

C-6-2. 15 M reads

 

5-C6-3

C-6-3. 20 M reads

 

D. DNA Sequencingincluded QCLibrary PreparationSequencing

 

D-1. Whole Genome Sequencing (2*150 PE)

 

5-D1-1

D-1-1. 10 M reads, 3 G (For bacteria WGS)

 

5-D1-2

D-1-2. 15 M reads, 4.5 G

 

5-D1-3

D-1-3. 33 M reads, 10 G

 

5-D1-4

D-1-4. 50 M reads, 15 G

 

5-D1-5

D-1-5. 66 M reads, 20 G

 

5-D1-6

D-1-6. 83 M reads, 25 G

 

D-2. Whole Exome Sequencing-Agilent (2*150 PE)

 

5-D2-1

D-2-1. 100 x coverage

 

5-D2-2

D-2-2. 150 x coverage

 

5-D2-3

D-2-3. 200 x coverage

 

5-D2-4

D-2-4. 250 x coverage

 

D-3. Whole Exome Sequencing (2*150 PE)

 

5-D3-1

D-3-1. 100 x coverage

 

5-D3-2

D-3-2. 150 x coverage

 

5-D3-3

D-3-3. 200 x coverage

 

5-D3-4

D-3-4. 250 x coverage

 

                   

D-4. FFPE-Whole Exome Sequencing (2*75 PE)

(included  FFPE  DNA extraction)

 

5-D4-1

D-4-1. 100 x coverage

 

5-D4-2

D-4-2. 150 x coverage

 

5-D4-3

D-4-3. 200 x coverage

 

5-D4-4

D-4-4. 250 x coverage

 

5-D4-5

D-4-5. 300 x coverage

 

E. Microbiome Sequencingincluded QCLibrary preparationSequencing

 

5-E1-1

E-1. Microbiome-16S Library construction and      Sequencing

 

5-E1-2

E-2. TCR beta chain repertoire Library construction and Sequencing

 

5-E1-3

E-3. TCR alpha chain repertoire Library construction and Sequencing

 

5-E1-4

E-4. BCR heavy chain repertoire Library construction and Sequencing

 

5-E1-5

E-5. BCR light chain repertoire Library construction and Sequencing

 
 

F. Targeted sequencing: Precision Medicine Panelincluded QCLibrary preparationSequencing

 

5-F1-1

F-1. Targeted DNA Panel-275 cancer-     related genes

 

5-Z-1

Customized Service

 

G. Single-cell sequencing4 Sample / kit_included Library preparation and Sequencing

 

5-G-1

Single Cell Gene expression (5’)/40G per sample

 

5-G-2

Single Cell Gene expression (3’)/40G per sample

 

5-G-3

Single Cell Immune Profiling BCR/10G per sample

 

5-G-4

Single Cell Immune Profiling TCR/10G per sample

 

5-Z-2

Customized Study

 

H. Visium Spatial Gene Expression (included QCLibrary preparationSequencing

 

5-H-1

Visium CytAssist for FFPE Spatial Gene Expression 6.5mm kit and Library preparation
 

5-H-2

Visium CytAssist for FFPE Spatial Gene Expression 6.5mm Sequencing, 75G per sample
 

5-H-3

Visium CytAssist for FFPE Spatial Gene Expression 6.5mm Sequencing, 50G per sample
 

5-Z-3

Customized Service